- Add healthcheck configurations to 13 stacks for Portainer status monitoring
- Remove Uptime Kuma service (replaced by Docker healthchecks)
- Clean up stale Heimdall references
- Update documentation and service counts
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- OpenAI-compatible API server with LLM agent orchestration
- Port 8000, connects to docker-dataplane network
- Integrates with ollama, searxng, redis-shared services
- Watchtower auto-update enabled
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Move library-desk service to git.schweitz.net/jpmschweitzer/library-desk
- Update stacks/library-desk.yml to use container image
- Add library-desk to External Repositories in CONTAINERS.md
- Remove source code (now in external repo)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Core-API service moved to git.schweitz.net/jpmschweitzer/core-api
- Source code removed from this repository
- Stack file updated to use container image from Gitea registry
- Documentation updated with external service reference
- Removed obsolete docs/services/core-api.md (docs now in core-api repo)
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Scheduler service moved to git.schweitz.net/jpmschweitzer/scheduler
- Source code removed from this repository
- Stack file updated to use container image from Gitea registry
- Added Gitea Actions runner to gitea stack for CI/CD
- Documentation updated with external service reference
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- OLLAMA_NUM_PARALLEL=1: Process requests sequentially to avoid batch
overflow panics when multiple services call embeddings concurrently
- OLLAMA_KEEP_ALIVE=-1: Keep models loaded in VRAM indefinitely
- OLLAMA_MAX_LOADED_MODELS=2: Allow both mistral-nemo and nomic-embed-text
to stay loaded simultaneously
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
GraphQL requires Int type, but page_id might be passed as string.
Explicit int() conversion prevents 400 Bad Request errors.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Previously called /api/tags twice (once for server check, once for
model check). Now reuses response from single call.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Fix WikiChangeListener: use get_page() instead of non-existent get_page_by_id()
- Fix webhooks: use delete_page_chunks() instead of non-existent delete_page_vectors()
- Fix Neo4j: replace deprecated id() with elementId() in entity query
- Change some warnings to debug level to reduce log noise
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add fuzzy_match_entity_to_document with confidence scoring
- Filter self-referential links (entity linking to current page)
- Fix path cleaning to preserve full wiki paths
- Add longest-first matching to prevent partial matches
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Replace WIKIJS_API_KEY with WIKIJS_USERNAME/PASSWORD and add
WIKIJS_DB_PASSWORD for PostgreSQL LISTEN/NOTIFY connection.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Add WikiChangeListener service for PostgreSQL notifications
- Add webhooks router for HTTP webhook fallback
- Add asyncpg dependency for PostgreSQL async support
- Include setup scripts and documentation for triggers
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
search_pages with empty query uses stale search index. list_all_pages
fetches actual page list from GraphQL for reliable bulk re-indexing.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Set d.tags = \$tags in MERGE query to prevent Neo4j warnings about
missing tags property in related documents query.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Pass ingestion_service to ConsolidationService constructor so pages
created/updated during consolidation are properly indexed in Qdrant
and Neo4j.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- Fetch existing wiki taxonomy structure before LLM analysis
- Include existing paths in prompt to prefer existing categories
- Add _format_taxonomy_for_prompt helper
- Mark searches as processed even when skipped/errored (prevents buildup)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
- list_all_pages: fetch all pages with path prefix filter
- get_taxonomy_structure: extract category/subcategory structure for
taxonomy-aware classification
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Use pages.singleByPath(path, locale) GraphQL query to get page ID
during initialization instead of searching through page list.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Fix create_entity_mentions to correctly count only newly created relationships,
not all relationships processed by MERGE.
**Problem**: count(r) was returning ALL relationships touched by MERGE (both
created and matched), breaking idempotency tests.
**Solution**: Use temporary flag 'just_created' set only ON CREATE, filter to
those relationships, count them, then remove the flag. This ensures the count
only includes new relationships.
Now properly returns:
- N on first run (N new relationships created)
- 0 on subsequent runs (no new relationships, all already exist)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Two critical bug fixes for entity linking:
1. **Path cleaning**: Replace hardcoded "users/jpmschweitzer/" with regex pattern
to handle any user namespace. Now properly cleans paths for all users.
2. **Longest-first matching**: Move protected_ranges computation inside entity loop
to recompute after each entity is processed. Prevents nested links like
[[Machine](/machine) Learning](/ml) when processing multi-word entities.
These fixes ensure entity linking works correctly across all users and prevents
nested markdown links when entity names overlap.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Cleanup Scripts:
- cleanup_graph.py - Clean up duplicate entities and orphaned nodes
- cleanup_wiki.py - Remove orphaned pages and fix broken links
- Utility scripts for database maintenance
- Not part of main application, run manually
Ingestion Router:
- POST /ingest/page - Index single page
- POST /ingest/batch - Batch indexing
- POST /ingest/all - Full knowledge base refresh
- Support vector and graph ingestion
Vector Router:
- POST /vector/search - Semantic search via Qdrant
- GET /vector/stats - Collection statistics
- DELETE /vector/page - Remove page embeddings
Wiki Router:
- GET /wiki/pages - List wiki pages
- GET /wiki/pages/{id} - Get page details
- PUT /wiki/pages/{id} - Update page
- POST /wiki/search - Search wiki content
- Full Wiki.js GraphQL integration
Tools Router:
- Expose library-desk capabilities as AI tool endpoints
- Support function calling for LLM agents
- Query wiki pages, search knowledge base
- Access graph entities and relationships
Tools Models:
- ToolDefinition for function schemas
- ToolParameter specifications
- ToolResponse format
- OpenAI function calling compatible
Graph Router:
- GET /graph/entities - List all entities for user
- GET /graph/relationships - Query entity relationships
- GET /graph/search - Search entities by name/type
- GET /graph/stats - Knowledge graph statistics
Graph Models:
- Entity, Relationship models
- GraphStats for analytics
- SearchFilters for queries
- Support multi-tenancy with user isolation
Configuration:
- Add HybridRAG settings (reranker model, search limits)
- Change Wiki.js auth from API key to username/password
- Configure vector, graph, and web search limits
Multi-tenancy:
- Add get_neo4j_user_base_label() for entity node labeling
- Support title-cased labels following Neo4j conventions
- Maintain namespace isolation for entities vs documents
Ollama Client:
- Improve model checking to handle :latest tag variants
- Match models with or without explicit tag
Qdrant Client:
- Add collection_exists() method for checking collection presence
- Refactor ensure_collection() to accept collection name directly
- Better separation of concerns
SearXNG Client:
- Add health_check() method for service monitoring
- Simple endpoint check without full search
- Used by health check endpoint
Vector Service:
- Manage document embeddings in Qdrant
- Update vectors from wiki pages
- Handle chunking and embedding generation
- Support force refresh and incremental updates
Vector Models:
- VectorSearchResult for search responses
- VectorUpdateSummary for indexing metrics
- Track chunks created/deleted
Used by ingestion_service for page embedding
- Add IngestionResult model for single page ingestion
- Add BatchIngestionResult for batch operations
- Track vector chunks, graph entities, and relationships
- Include processing time metrics
Used by ingestion_service for page indexing
- Add WikiPage model for page data
- Add WikiPageUpdate model for partial updates
- Add field validators for tags and descriptions
- Support optional fields for flexible updates
Used by wiki_service and entity_linking router
Main App:
- Mount /static directory for serving Wiki.js integration scripts
- Register entity_linking router
- Refactor API key verification to dependencies module
Dependencies:
- Add service factory functions for all services
- Add get_wiki_service() for wiki operations
- Add get_graph_service() for entity operations
- Add get_ingestion_service() for auto entity linking
- Improve health check for SearXNG
- Add combined integration script with both re-index and entity linking
- Add standalone entity linking button
- Add standalone re-index button
- Auto-detect Library Desk URL from script tag
- Support both toolbar and floating button positions
- Show real-time status updates and notifications
- Auto-reload page after successful entity linking
Usage: Inject via Wiki.js Code Injection settings
<script src="http://IP:8089/static/wikijs-integration.js"></script>
Graph Service:
- Add get_all_entities() to retrieve entities with wiki page paths
- Add create_entity_mentions() for MENTIONS relationship creation
- Support entity-to-document linking via title matching
Ingestion Service:
- Add _link_existing_entities() for automatic entity linking
- Auto-link entities during page ingestion
- Support skip_entity_linking parameter for granular control
- Add is_published parameter to WikiJS client update_page() method
- Update wiki_service to always pass is_published=True
- Prevents pages from being unpublished during entity linking updates
- Important for internal wikis where all pages should remain published
jpmschweitzerandClaude Opus 4.5