chore(deps): bump the python group across 1 directory with 8 updates

Updates the requirements on [rapidocr](https://github.com/RapidAI/RapidOCR), [onnxruntime](https://github.com/microsoft/onnxruntime), [markitdown](https://github.com/microsoft/markitdown), [httpcore](https://github.com/encode/httpcore), [pydantic](https://github.com/pydantic/pydantic), [pydantic-settings](https://github.com/pydantic/pydantic-settings), [grpcio](https://github.com/grpc/grpc) and [mcp](https://github.com/modelcontextprotocol/python-sdk) to permit the latest version.

Updates `rapidocr` from 3.9.2 to 3.10.0
- [Release notes](https://github.com/RapidAI/RapidOCR/releases)
- [Commits](https://github.com/RapidAI/RapidOCR/compare/v3.9.2...v3.10.0)

Updates `onnxruntime` to 1.31.0
- [Release notes](https://github.com/microsoft/onnxruntime/releases)
- [Changelog](https://github.com/microsoft/onnxruntime/blob/main/docs/ReleaseNotesWorkflow.md)
- [Commits](https://github.com/microsoft/onnxruntime/compare/v1.20.0...v1.31.0)

Updates `markitdown` from 0.1.6 to 0.1.9
- [Release notes](https://github.com/microsoft/markitdown/releases)
- [Commits](https://github.com/microsoft/markitdown/compare/v0.1.6...v0.1.9)

Updates `httpcore` to 1.0.9
- [Release notes](https://github.com/encode/httpcore/releases)
- [Changelog](https://github.com/encode/httpcore/blob/master/CHANGELOG.md)
- [Commits](https://github.com/encode/httpcore/compare/1.0.0...1.0.9)

Updates `pydantic` to 2.14.1
- [Release notes](https://github.com/pydantic/pydantic/releases)
- [Changelog](https://github.com/pydantic/pydantic/blob/main/HISTORY.md)
- [Commits](https://github.com/pydantic/pydantic/compare/v2.13.4...v2.14.1)

Updates `pydantic-settings` to 2.16.1
- [Release notes](https://github.com/pydantic/pydantic-settings/releases)
- [Commits](https://github.com/pydantic/pydantic-settings/compare/v2.14.1...v2.16.1)

Updates `grpcio` to 1.85.0
- [Release notes](https://github.com/grpc/grpc/releases)
- [Commits](https://github.com/grpc/grpc/compare/v1.84.1...v1.85.0)

Updates `mcp` to 2.3.0
- [Release notes](https://github.com/modelcontextprotocol/python-sdk/releases)
- [Changelog](https://github.com/modelcontextprotocol/python-sdk/blob/main/RELEASE.md)
- [Commits](https://github.com/modelcontextprotocol/python-sdk/compare/v0.2.0...v2.3.0)

---
updated-dependencies:
- dependency-name: rapidocr
  dependency-version: 3.10.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: onnxruntime
  dependency-version: 1.31.0
  dependency-type: direct:production
  dependency-group: python
- dependency-name: markitdown
  dependency-version: 0.1.9
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python
- dependency-name: httpcore
  dependency-version: 1.0.9
  dependency-type: direct:production
  dependency-group: python
- dependency-name: pydantic
  dependency-version: 2.14.1
  dependency-type: direct:production
  dependency-group: python
- dependency-name: pydantic-settings
  dependency-version: 2.16.1
  dependency-type: direct:production
  dependency-group: python
- dependency-name: grpcio
  dependency-version: 1.85.0
  dependency-type: direct:production
  dependency-group: python
- dependency-name: mcp
  dependency-version: 2.3.0
  dependency-type: direct:production
  dependency-group: python
...

Signed-off-by: dependabot[bot] <support@github.com>

requirements-optional.txt

@@ -1,7 +1,7 @@
 # Optional dependencies — install only if you use the corresponding feature.
 # Local OCR for screenshots, scans, labels, and coordinate-grounded text extraction.
-rapidocr==3.9.2
+rapidocr==3.10.0
-onnxruntime>=1.20,<2
+onnxruntime>=1.31.0,<2
 # The app handles their absence gracefully (clear error message on first use).
 #
 # Note: chromadb-client + fastembed moved to requirements.txt — RAG, semantic
@@ -46,7 +46,7 @@ PyMuPDF
 # magika (onnxruntime), already a core dep via fastembed. We avoid the
 # [all]/Azure/audio extras (cloud + heavy). Pinned to a release >30 days old per
 # the dependency-age discussion in issue #485.
-markitdown[docx,pptx,xlsx,xls]==0.1.6
+markitdown[docx,pptx,xlsx,xls]==0.1.9
 
 # Photoshop PSD opening / flattened previews / layer inspection.
 psd-tools

requirements.txt

@@ -5,9 +5,9 @@ python-dotenv
 httpx
 # HTTPS clients using certifi must distrust the compromised eMudhra CA paths.
 certifi>=2026.10.23
-httpcore>=1.0,<2.0
+httpcore>=1.0.9,<2.0
-pydantic>=2.13.4
+pydantic>=2.14.1
-pydantic-settings>=2.14.1
+pydantic-settings>=2.16.1
 SQLAlchemy
 pypdf
 pypdfium2
@@ -25,7 +25,7 @@ numpy
 # ChromaDB service); fastembed runs local ONNX embeddings.
 chromadb-client
 # gRPC vendors independent roots; 1.84.1 removes the incident trust anchors.
-grpcio>=1.84.1
+grpcio>=1.85.0
 fastembed>=0.9.1
 youtube-transcript-api
 yt-dlp
@@ -51,7 +51,7 @@ bcrypt
 # Built-in servers use the v1 low-level Server decorator API. MCP SDK v2 is a
 # breaking rewrite, so keep fresh installs on the maintained v1 line until the
 # servers are migrated together.
-mcp<2
+mcp<3
 pyotp
 qrcode[pil]
 croniter

scripts/verify_notes_browser_runtime.py

@@ -11,38 +11,6 @@ import time
 from urllib.request import urlopen
 
 ROOT = Path(__file__).resolve().parents[1]
-if str(ROOT) not in sys.path:
-    sys.path.insert(0, str(ROOT))
-
-
-def _stop_owned_server(server, identity):
-    """Close only identity-bound descendants, including MCP's new sessions.
-
-    Capture before signalling the parent: an orphaned stderr holder can no
-    longer be attributed by ancestry. Never search by executable name or kill
-    the caller's process group.
-    """
-    from src import process_lifecycle as lifecycle
-
-    descendants = (lifecycle.bind_descendants([identity.pid])
-                   if identity.verdict() == lifecycle.OWNED else [])
-    if os.name == "nt":
-        if identity.verdict() == lifecycle.OWNED:
-            lifecycle.taskkill_tree(identity.pid)
-    else:
-        outcome = lifecycle.terminate_identities(
-            [*(entry.identity for entry in reversed(descendants)), identity],
-            steps=lifecycle.term_kill_steps(10),
-        )
-        if outcome.survivors or outcome.unverified:
-            raise RuntimeError(f"Disposable Notes cleanup could not verify exit: {outcome}")
-    try:
-        logs, _ = server.communicate(timeout=2)
-    except subprocess.TimeoutExpired as error:
-        # Do not turn an unidentified pipe holder into an unbounded wait.
-        server.stdout.close()
-        raise RuntimeError("Disposable Notes output pipe remained open after owned cleanup") from error
-    return logs
 
 
 def main():
@@ -68,10 +36,7 @@ def main():
         server = subprocess.Popen(
             [sys.executable, "-m", "uvicorn", "app:app", "--host", "127.0.0.1", "--port", str(port)],
             cwd=target, env=env, stdout=subprocess.PIPE, stderr=subprocess.STDOUT, text=True,
-            start_new_session=(os.name != "nt"),
         )
-        from src.process_lifecycle import ProcessIdentity
-        server_identity = ProcessIdentity.capture(server.pid)
         result = None
         try:
             origin = f"http://127.0.0.1:{port}"
@@ -97,7 +62,12 @@ def main():
                 print(result.stderr, file=sys.stderr)
             return result.returncode
         finally:
-            logs = _stop_owned_server(server, server_identity)
+            server.terminate()
+            try:
+                logs, _ = server.communicate(timeout=10)
+            except subprocess.TimeoutExpired:
+                server.kill()
+                logs, _ = server.communicate()
             if result is None or result.returncode:
                 print(logs[-8000:], file=sys.stderr)
 

tests/test_notes_native_cleanup.py

@@ -1,43 +0,0 @@
-"""A detached Notes descendant must not hold output open or kill a bystander."""
-import os
-import runpy
-import subprocess
-import sys
-from pathlib import Path
-
-import pytest
-from src import process_lifecycle as lifecycle
-
-ROOT = Path(__file__).resolve().parents[1]
-
-
-@pytest.mark.skipif(os.name == "nt", reason="POSIX detached-session regression; Windows uses taskkill tree")
-def test_notes_cleanup_reaps_detached_pipe_holder_and_preserves_bystander():
-    stop = runpy.run_path(str(ROOT / "scripts/verify_notes_browser_runtime.py"))["_stop_owned_server"]
-    child = "import time; time.sleep(60)"
-    program = ("import subprocess,sys,time; "
-               f"p=subprocess.Popen([sys.executable,'-c',{child!r}],start_new_session=True); "
-               "print(p.pid,flush=True); time.sleep(60)")
-    with subprocess.Popen([sys.executable, "-c", child]) as bystander:
-        server = subprocess.Popen([sys.executable, "-c", program], stdout=subprocess.PIPE,
-                                  stderr=subprocess.STDOUT, text=True, start_new_session=True)
-        root_identity = lifecycle.ProcessIdentity.capture(server.pid)
-        detached = None
-        try:
-            child_pid = int(server.stdout.readline())
-            detached = lifecycle.ProcessIdentity.capture(child_pid)
-            assert os.getpgid(child_pid) == child_pid
-            stop(server, root_identity)
-            assert server.poll() is not None
-            assert detached.exited()
-            assert bystander.poll() is None, "cleanup touched an unrelated process"
-        finally:
-            # Test-owned fallback cleanup also runs when the negative control
-            # intentionally substitutes the old parent-only teardown.
-            targets = [identity for identity in (detached, root_identity) if identity]
-            lifecycle.terminate_identities(targets, steps=lifecycle.term_kill_steps(1))
-            server.wait(timeout=3)
-            if server.stdout:
-                server.stdout.close()
-            bystander.terminate()
-            bystander.wait(timeout=3)